PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF063400070CFD_t1
Common NameTRAES_3BF063400070CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 331aa    MW: 36840.1 Da    PI: 6.7054
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF063400070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.74.8e-19211468126
                      NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWk.a 85 
                              hP ++el+  yL ++v++ ++++ ++i+e d+y ++P+dL +      ++++++ wyfF+  + k   g r+ r    ++g W+ +
  TRAES3BF063400070CFD_t1  21 HPCEQELIAAYLGPRVTEGDMSC-KFIHEGDVYAAHPEDLTQqyaaaVASNGDEAWYFFTAVRAKG--GGRRGRtvDSQEGCWHsE 103
                              9**********************.89**************853566444447889****9998875..445555245679****45 PP

                      NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmhey 126
                               g++ ev ++  +g l g ++ + f ++++   +++ W+m e 
  TRAES3BF063400070CFD_t1 104 AGSKPEVSAHhhGGGLLGHRQNFSFVTKEDGVRVRSGWLMVEL 146
                              5666666665667888**********99999999******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.71714164IPR003441NAC domain
SuperFamilySSF1019412.48E-2820164IPR003441NAC domain
PfamPF023652.2E-1121146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVAYARRSRA PGRPHFALDA HPCEQELIAA YLGPRVTEGD MSCKFIHEGD VYAAHPEDLT  60
QQYAAAVASN GDEAWYFFTA VRAKGGGRRG RTVDSQEGCW HSEAGSKPEV SAHHHGGGLL  120
GHRQNFSFVT KEDGVRVRSG WLMVELGLHG DGQDEVTLCK VYFSPRAAKN NKKPAASSSA  180
RKRKADAGSP APARQCRRRR EMNQDDHPVE KQAVKAGKQE GFVEESSADE PEVVDPNDFF  240
WWVRNKEKLR LALGISEEDF YRPPSAAALE RSFGPDWPPA APPSSPVVPN EDKPVVMWLT  300
YEELHGLPEV REFLSPTKLL EEMRSSVKQH E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181199KRKADAGSPAPARQCRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458311.17e-61hypothetical protein SORBIDRAFT_03g031000
TrEMBLA0A077RSX20.0A0A077RSX2_WHEAT; Uncharacterized protein
STRINGBRADI2G46020.14e-86(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.18e-08NAC family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]